Cover Optimize uses a patch file. The exact patch file you need depends on your setup, but here are some examples using git diff. The variable DIFFBLUE_PATCH represents the name of your patch file.
For a patch containing commits newer than the project's origin (i.e. the corresponding branch on the remote repository your local branch was created from):
For a patch containing commits on your branch newer than those on the local copy of TARGET_BRANCH (e.g. where TARGET_BRANCH is develop):
git diff TARGET_BRANCH...HEAD> $DIFFBLUE_PATCH
For a patch containing commits on your branch newer than those on the remote host TARGET_BRANCH (e.g. where REMOTE is origin and REMOTE/TARGET_BRANCH is origin/develop):